getCNGECorrelation {RTCGAToolbox} | R Documentation

## Perform correlation analysis betwwen gene expression and copy number data

### Description

`getCNGECorrelation` returns a list that stores the results correlation between gene expression and copy number data.

### Usage

    getCNGECorrelation(dataObject, adj.method = "BH", adj.pval = 0.05,
      raw.pval = 0.05)

### Arguments

`dataObject` | This must be `FirehoseData` object.
`adj.method` | Raw p value adjustment methods (Default "BH")
`adj.pval` | Adjusted p value cut off for results table (Default 0.05)
`raw.pval` | raw p value cut off for results table (Default 0.05)

### Value

Returns a list that stores results for each dataset

### Examples

    data(RTCGASample)
    corRes <- getCNGECorrelation(RTCGASample)
    corRes
    showResults(corRes[[1]])

[Package RTCGAToolbox version 2.16.3 Index]