# Splice Interpreter of Transcripts

## Documentation for package ‘SPLINTER’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

acceptor.m | acceptor.m
addEnsemblAnnotation | addEnsemblAnnotation
annotateEvents | annotateEvents
callPrimer3 | callPrimer3
checkPrimer | checkPrimer
compatible_cds | compatible_cds
compatible_tx | compatible_tx
donor.m | donor.m
eventOutcomeCompare | eventOutcomeCompare
eventOutcomeTranslate | eventOutcomeTranslate
eventPlot | eventPlot
extendROI | extendROI
extractSpliceEvents | extractSpliceEvents
extractSpliceSites | extractSpliceSites
findCompatibleEvents | findCompatibleEvents
findCompatibleExon | findCompatibleExon
findTX | findTX
getPCRsizes | getPCRsizes
getRegionDNA | getRegionDNA
insertRegion | insertRegion
makeROI | makeROI
makeUniqueIDs | makeUniqueIDs
pcr_result1 | pcr_result1
plot_seqlogo | plotting sequence logo
primers | primers
psiPlot | psiPlot
region_minus_exon | region_minus_exon
removeRegion | removeRegion
roi | roi
shapiroAcceptor | shapiroAcceptor
shapiroDensity | shapiroDensity
shapiroDonor | shapiroDonor
splice_data | splice_data
splice_fasta | splice_fasta
splitPCRhit | splitPCRhit
thecds | thecds
theexons | theexons
valid_cds | valid_cds
valid_tx | valid_tx