load_mart {SWATH2stats} | R Documentation

## load_mart: Load a biomart database

### Description

This function loads a biomart database

### Usage

    load_mart(species, ensembl.path, mart, verbose = FALSE)

### Arguments

`species` | The species of the protein identifiers in the term used by biomaRt (e.g. "hsapiens_gene_ensembl", "mmusculus_gene_ensembl", "drerio_gene_ensembl", etc.)
`ensembl.path` | Path of the biomaRt database.
`mart` | The species of the protein identifiers in the term used by biomaRt (e.g. "hsapiens_gene_ensembl", "mmusculus_gene_ensembl", "drerio_gene_ensembl", etc.)
`verbose` | Option to write a file containing the version of the database used.

### Value

Returns the mart from biomaRt.

### Note

Protein identifiers from shared peptides should be separated by a forward slash. The host of archived ensembl databases can be introduced as well (e.g. "dec2017.archive.ensembl.org")

### Author(s)

Peter Blattmann

### Examples

    organism.mart <- load_mart("hsapiens_gene_ensembl", "www.ensembl.org", "ENSEMBL_MART_ENSEMBL")
    class(organism.mart)

[Package SWATH2stats version 1.16.0 Index]