bubbles-methods {SplicingGraphs} | R Documentation

## Compute the bubbles of a splicing graph

### Description

`bubbles` computes the bubbles of the splicing graph of a given gene from a SplicingGraphs object.

### Usage

    bubbles(x)

    ASCODE2DESC

### Arguments

`x` | A SplicingGraphs object of length 1.

### Details

TODO

### Value

TODO

### Author(s)

H. Pagès

### See Also

This man page is part of the SplicingGraphs package. Please see `?`SplicingGraphs-package`` for an overview of the package and for an index of its man pages.

### Examples

    example(SplicingGraphs)  # create SplicingGraphs object 'sg'
    sg

    ## 'sg' has 1 element per gene and 'names(sg)' gives the gene ids.
    names(sg)

    plot(sgraph(sg["geneA"], tx_id.as.edge.label=TRUE))
    bubbles(sg["geneA"])

    plot(sgraph(sg["geneB"], tx_id.as.edge.label=TRUE))
    bubbles(sg["geneB"])

    plot(sgraph(sg["geneD"], tx_id.as.edge.label=TRUE))
    bubbles(sg["geneD"])

[Package SplicingGraphs version 1.26.1 Index]