tsProfile-class {TargetSearch} | R Documentation

## Class for representing a MS profile

### Description

This class is to represent a MS profile

### Objects from the Class

Objects can be created by the function `Profile` or by

`new("tsMSdata", RI = [retention time index matrix], RT = [retention time matrix], Intensity = [peak intensity])`

### Slots

`info`:

  `"data.frame"`, the profile information.

`RI`:

  `"list"`, a list containing RI matrices, one matrix per metabolite

`RT`:

  `"list"`, a list containing RT matrices, one matrix per metabolite

`Intensity`:

  `"list"`, a list containing peak-intensity matrices, one matrix per metabolite

`profRI`:

  `"matrix"`, the profile RI matrix.

`profRT`:

  `"matrix"`, the profile RT matrix.

`profInt`:

  `"matrix"`, the profile Intensity matrix.

### Extends

Class `tsMSdata`, directly.

### Methods

profileInfo

  `signature(obj = "tsProfile")`: get the profile information.

profileInfo<-

  `signature(obj = "tsProfile")`: set the profile information.

profileInt

  `signature(obj = "tsProfile")`: get the profile intensity matrix.

profileInt<-

  `signature(obj = "tsProfile")`: set the profile intensity matrix.

profileRI

  `signature(obj = "tsProfile")`: get the profile RI matrix.

profileRI<-

  `signature(obj = "tsProfile")`: set the profile RI matrix.

profileRT

  `signature(obj = "tsProfile")`: get the profile RT matrix.

profileRT<-

  `signature(obj = "tsProfile")`: set the profile RT matrix.

show

  `signature(object = "tsProfile")`: the show function.

### Author(s)

Alvaro Cuadros-Inostroza, Matthew Hannah, Henning Redestig

### See Also

`Profile`, `ProfileCleanUp`, `tsMSdata`

### Examples

    showClass("tsProfile")

[Package TargetSearch version 1.42.1 Index]