Package: ToPASeq
Version: 1.20.0
Date: 2019-03-19
Title: Topology-based pathway analysis of RNA-seq data
Author: Ivana Ihnatova, Eva Budinska, Ludwig Geistlinger
Maintainer: Ivana Ihnatova <ihnatova@iba.muni.cz>
Description: Implementation of methods for topology-based pathway analysis of 
    RNA-seq data. This includes Topological Analysis of Pathway Phenotype 
    Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; 
    Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 
    2012).
Depends: R(>= 3.5.0), graphite
Imports: Rcpp, graph, methods, Biobase, RBGL, SummarizedExperiment,
        gRbase, limma, corpcor
Suggests: BiocStyle, airway, knitr, rmarkdown, DESeq2, DESeq, edgeR,
        plotrix, breastCancerVDX, EnrichmentBrowser
LinkingTo: Rcpp
LazyData: yes
License: AGPL-3
biocViews: ImmunoOncology, GeneExpression, RNASeq,
        DifferentialExpression, GraphAndNetwork, Pathways,
        NetworkEnrichment, Visualization
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/ToPASeq
git_branch: RELEASE_3_10
git_last_commit: a760d80
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
NeedsCompilation: yes
Packaged: 2019-10-30 02:53:02 UTC; biocbuild
Built: R 3.6.1; i386-w64-mingw32; 2019-10-30 14:20:59 UTC; windows
Archs: i386, x64
