.analyzeUpstreamValidity {abseqR} | R Documentation

## Plots the validity of upstream sequences

### Description

Plots the distribution of valid, faulty, and missing start codon in IGV germlines (repeated for gene and family levels).

### Usage

    .analyzeUpstreamValidity(upstreamDirectories, upstreamOut, expectedLength,
      upstreamLengthRange, sampleNames, combinedNames, mashedNames,
      .save = TRUE)

### Arguments

`upstreamDirectories` | list type. List of sample directories
`upstreamOut` | string type. Output directory
`expectedLength` | int type. Expected length of upstream sequences. (i.e. upstream_end - upstream_start + 1). If this is infinite, no plots will be generated.
`upstreamLengthRange` | string type. start_end format
`sampleNames` | vector type. 1-1 with upstream directories
`combinedNames` | string type. Title friendly "combined" sample names
`mashedNames` | string type. File friendly "mashed-up" sample names
`.save` | logical type. Save Rdata?

### Value

None

[Package abseqR version 1.4.0 Index]