.plotIGVUpstreamLenDistDetailed {abseqR} | R Documentation

## Plots the detailed length distribution for IGV families

### Description

A boxplot for each IGV families showing the IQR of upstream lengths. In contrast to `.plotIGVUpstreamLenDist`, which only shows the distribution of IGV families over `upstreamLengthRange`.

### Usage

    .plotIGVUpstreamLenDistDetailed(upstreamDirectories, upstreamOut,
      upstreamLengthRange, lengthType, sampleNames, combinedNames, mashedNames,
      .save = TRUE)

### Arguments

`upstreamDirectories` | list type. List of sample directories
`upstreamOut` | string type. Output directory
`upstreamLengthRange` | The range of upstream sequences to be included in this plot. This is usually determined by abseqPy and the format should be as follows: "min_max", e.g.: 1_15 means range(1, 15) inclusive.string type.
`lengthType` | string type. "" (the empty string) denotes everything and "_short" denotes a short sequence. abseqPy dictates this because it's used for locating the files.
`sampleNames` | vector type. 1-1 with upstream directories
`combinedNames` | string type. Title friendly "combined" sample names
`mashedNames` | string type. File friendly "mashed-up" sample names
`.save` | logical type. Save Rdata?

### Value

None

[Package abseqR version 1.4.0 Index]