.abundanceAnalysis {abseqR} | R Documentation

## Conducts abundance analysis

### Description

Conducts abundance analysis

### Usage

    .abundanceAnalysis(abundanceDirectories, abunOut, sampleNames,
      combinedNames, mashedNames, skipDgene = FALSE, .save = TRUE)

### Arguments

`abundanceDirectories` | list type. List of sample directories
`abunOut` | string type. Output directory
`sampleNames` | vector type. 1-1 correspondence with abundanceDirectories
`combinedNames` | string type. Title "combined" sample names
`mashedNames` | string type. File "mashed" names - avoid special chars
`skipDgene` | logical type. Skip D gene plots?
`.save` | logical type. Save ggplot as Rdata

### Value

None

[Package abseqR version 1.4.0 Index]