get_GOterm2GeneAssos {dSimer} | R Documentation

## get GO-gene associations

### Description

get GO-gene associations from GO.db and org.Hs.eg.db

### Usage

    get_GOterm2GeneAssos(GOONTOLOGY = c("BP", "MF", "CC"),
      geneid = c("ENTREZID", "SYMBOL", "OMIM"), rm.IEAs = TRUE,
      rm.termlessthan3genes = TRUE)

### Arguments

`GOONTOLOGY` | "BP" or "MF" or "CC
`geneid` | gene id type, "ENTREZID" or "SYMBOL"
`rm.IEAs` | logical value, remove GO terms with evidence "IEA" or not
`rm.termlessthan3genes` | logical value, remove terms whose number of annotated genes are less than 3 or not

### Value

a list which names are GO term IDs and elements are gene ids or symbols annotated with GO terms

### Author(s)

Peng Ni, Min Li

### References

Mathur S, Dinakarpandian D. Finding disease similarity based on implicit semantic similarity[J]. Journal of biomedical informatics, 2012, 45(2): 363-371.

### See Also

`PSB`, `Sun_function`

### Examples

    go2g<-get_GOterm2GeneAssos(GOONTOLOGY="BP", geneid="SYMBOL")
    go2g

[Package dSimer version 1.12.0 Index]