HypergeometricTest {dSimer} | R Documentation

## Hypergeometric test and multiple testing

### Description

given disease-gene associations and go-gene associations, return disease-go associations by using hypergeometric test and fdr mulitiple testing

### Usage

    HypergeometricTest(d2g, go2g, method = "BH", cutoff = 0.05)

### Arguments

`d2g` | a list of disease-gene associations
`go2g` | a list of GOterm-gene associations
`method` | multiple testing method, the same as parameter in method p.adjust
`cutoff` | multiple testing cut off value

### Value

a list of disease-GO term associations

### Author(s)

Peng Ni, Min Li

### See Also

`PSB`, `Sun_function`, `get_GOterm2GeneAssos`

### Examples

    ## see more examples in function PSB or Sun_function
    data(d2go_sample)
    data(go2g_sample)
    data(d2g_fundo_symbol)
    HypergeometricTest(d2g_fundo_symbol[names(d2go_sample)],go2g_sample)

[Package dSimer version 1.12.0 Index]