padGRanges {diffloop} | R Documentation

## Pad a GRanges object

### Description

`padGRanges` takes a GRanges object and adds or substracts distance based on user-defined input. Upstream and downstream consider strand information when available. Specify only either pad or upstream/downstream when using

### Usage

    padGRanges(gro, upstream = 0, downstream = 0, pad = 0)

    ## S4 method for signature 'GRanges'
    padGRanges(gro, upstream = 0, downstream = 0, pad = 0)

### Arguments

`gro` | A granges object
`upstream` | Distance in BP added upstream
`downstream` | Distance in BP added downstream
`pad` | Distance in BP added

### Value

A GRanges object with adjusted start and end values

### Examples

    #Read in CTCF Jurkat peaks in
    ctcf_j <- system.file('extdata','Jurkat_CTCF_chr1.narrowPeak',package = 'diffloop')
    ctcf <- bedToGRanges(ctcf_j)
    ctcf.pad <- padGRanges(ctcf, pad = 1000)

[Package diffloop version 1.14.0 Index]