plot_impacts {seqCAT} | R Documentation

## Plot SNV impact distribution

### Description

Plot SNV impact distributions for a binary SNV profile comparison.

### Usage

    plot_impacts(comparison, legend = TRUE, annotate = TRUE,
      annotate_size = 9, text_size = 14, palette = c("#0D2D59",
      "#1954A6"))

### Arguments

`comparison` | The SNV profile comparison to be plotted.
`legend` | Show the legend (boolean).
`annotate` | Annotate each category (boolean).
`annotate_size` | Text size for annotations (numeric).
`text_size` | Text size for axes, ticks and legend (numeric).
`palette` | Colour palette for filling of bars (character vector).

### Details

This function creates publication-ready plots of the impact distribution from a binary dataset comparison across the matched/mismatched SNVs.

### Value

A ggplot2 graphical object.

### Examples

    # Load test comparison data
    data(test_comparison)

    # Plot the impact distribution
    impacts <- plot_impacts(test_comparison)

[Package seqCAT version 1.8.1 Index]