# Generated by roxygen2: do not edit by hand

export(chicWrapper)
export(createMetageneProfile)
export(getCrossCorrelationScores)
export(getPeakCallingScores)
export(listAvailableElements)
export(listDatasets)
export(metagenePlotsForComparison)
export(plotReferenceDistribution)
export(predictionScore)
export(qualityScores_EM)
export(qualityScores_GM)
export(qualityScores_LM)
export(qualityScores_LMgenebody)
export(readBamFile)
export(removeLocalTagAnomalies)
export(tagDensity)
import(ChIC.data)
import(GenomicRanges)
import(caret)
import(spp)
importFrom(BiocGenerics,strand)
importFrom(IRanges,IRanges)
importFrom(IRanges,findOverlaps)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,matplot)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,polygon)
importFrom(graphics,text)
importFrom(methods,new)
importFrom(parallel,makeCluster)
importFrom(parallel,mclapply)
importFrom(parallel,stopCluster)
importFrom(progress,progress_bar)
importFrom(stats,density)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,data)
importFrom(utils,str)
importFrom(utils,write.table)
