xyTrack {BubbleTree} | R Documentation

## xyTrack

### Description

get the xy track

### Usage

    xyTrack(.Object, result.dat, gr2, min.prev = 0.15, ymax = 4.3)

    ## S4 method for signature 'TrackPlotter'
    xyTrack(.Object, result.dat, gr2, min.prev = 0.15,
      ymax = 4.3)

### Arguments

`.Object` | the object
`result.dat` | result dataframe
`gr2` | gr2 object
`min.prev` | previous min
`ymax` | the max y

### Value

the highlighted xy track

### Examples

    load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
    load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
    load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))

    trackplotter <- new("TrackPlotter")
    gr2 = centromere.dat
    nn <- "sam2"
    ymax <- ifelse(nn %in% c("lung.wgs", "lung.wes"), 9, 4.3)
    p1 <- xyTrack(trackplotter,
                  result.dat=allCall.lst[[nn]]@result,
                  gr2=gr2,
                  ymax=ymax) + ggplot2::labs(title=nn)

[Package BubbleTree version 2.18.0 Index]