getCoordinates_stats {CONFESS} | R Documentation

## getCoordinates_stats

### Description

It finds the spot coordinates using the spot centers or BF image modeling

### Usage

    getCoordinates_stats(centerR, centerG, minDiff, chaImgs, ll, ws, estCenter)

### Arguments

`centerR` | Data matrix. The location statistics in one channel.
`centerG` | Data matrix. The location statistics in thew other channel.
`minDiff` | Float. the mu_hat of the H0: image-to-noise ratio = log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0 implies that the identified spot is brighter than background. Default is 0.5.
`chaImgs` | List. A list of the channel images (data matrices) of a sample.
`ll` | Data matrix. An internal parameter specifying the spot center.
`ws` | List. An internal parameter specifying the spot center.
`estCenter` | Data matrix. The estimated spot center by BF image modelling.

### Value

A series of location estimates includying the channel-specific spot center and spot areas

[Package CONFESS version 1.16.0 Index]