runTesting {DChIPRep} | R Documentation

## Run the tests on a DChIPRepResults object.

### Description

This function runs the testing on a `DChIPRepResults` object. It adds the FDR calculations and the result table to the `DChIPRepResults` object.

### Usage

    ## S4 method for signature 'DChIPRepResults'
    runTesting(object, lfcThreshold = 0.05,
      plotFDR = FALSE, ...)

### Arguments

`object` | A DChIPRepResults object.
`lfcThreshold` | A non-negative threshold value, which determines the null hypothesis. The null hypothesis is H_0: |log2(FC)| > `lfcThreshold`
`plotFDR` | If set to TRUE a plot showing the estimated FDRs will be displayed
`...` | not used currently

### Value

a modified DChIPRepResults object containing the testing results

### See Also

`resultsDChIPRep`

### Examples

    data(testData)
    dcr <- DChIPRepResults(testData)
    dcr <- runTesting(dcr)

[Package DChIPRep version 1.18.0 Index]