computeDrivers {DriverNet} | R Documentation

## Compute a list of driver mutations

### Description

Use a greedy algorithm to rank a list of driver mutations.

### Usage

    computeDrivers(patMutMatrix, patOutMatrix, influenceGraph, outputFolder = NULL,
    printToConsole = FALSE, weighted = FALSE)

### Arguments

`patMutMatrix` | Patient Mutation Matrix
`patOutMatrix` | Patient Outlier Matrix
`influenceGraph` | Influence Graph Matrix
`outputFolder` | The folder to store the log. If set to NULL, no log files will be written. If set to "", the log will be written to the current folder.
`printToConsole` | If set to TRUE, progress and result of the function will be printed to the console.
`weighted` | Must be set to FALSE in this version.

### Value

An object of DriverNetResult class that can be passed to the `resultSummary` method.

### Author(s)

Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah

Maintainer: Jiarui Ding <jiaruid@cs.ubc.ca>

### Examples

    data(samplePatientMutationMatrix)
    data(samplePatientOutlierMatrix)
    data(sampleInfluenceGraph)
    driversList = computeDrivers(samplePatientMutationMatrix, samplePatientOutlierMatrix,
    sampleInfluenceGraph, outputFolder=NULL, printToConsole=FALSE)

    drivers(driversList)[1:10]

[Package DriverNet version 1.28.0 Index]