preprocessMatrices {DriverNet} | R Documentation

## Remove unnecessary entries from matrices

### Description

Remove patients (rows) which are not in both matrices from patMutMatrix and patOutMatrix. Remove mutations (columns) from patMutMatrix if they are not a row of influenceGraph. Remove expressions (columns) from patOutMatrix if they are not a column of influenceGraph.

### Usage

    preprocessMatrices(patMutMatrix, patOutMatrix, influenceGraph)

### Arguments

`patMutMatrix` | Patient Mutation Matrix
`patOutMatrix` | Patient Outlier Matrix
`influenceGraph` | Influence Graph Matrix

### Value

`1` | Reduced version of Patient Mutation Matrix
`2` | Reduced version of Patient Expression(Outlier) Matrix
`3` | Influence Graph Matrix

### Note

The dimension of influenceGraph is not changed.

### Author(s)

Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah

Maintainer: Jiarui Ding <jiaruid@cs.ubc.ca>

### Examples

    data(samplePatientMutationMatrix)
    data(samplePatientOutlierMatrix)
    data(sampleInfluenceGraph)
    tmp = preprocessMatrices(samplePatientMutationMatrix, samplePatientOutlierMatrix,
    sampleInfluenceGraph)

    smallerPatientMutationMatrix = tmp[[1]]
    smallerPatientOutlierMatrix = tmp[[2]]
    influenceGraph = tmp[[3]]

[Package DriverNet version 1.28.0 Index]