save_gnet {GNET2} | R Documentation

## Save the GNET2 results

### Description

Save the edge list, group index of each gene and plot the top groups

### Usage

    save_gnet(gnet_result, save_path = ".", num_module = 10, max_gene_num = 100)

### Arguments

`gnet_result` | Results returned by gnet().
`save_path` | path to save files
`num_module` | The number of modules with highest score to plot.
`max_gene_num` | The max number of genes to show in the heatmap.

### Value

None

### Examples

    set.seed(1)
    init_group_num = 5
    init_method = 'boosting'
    exp_data <- matrix(rnorm(50*10),50,10)
    reg_names <- paste0('TF',1:5)
    rownames(exp_data) <- c(reg_names,paste0('gene',1:(nrow(exp_data)-length(reg_names))))
    colnames(exp_data) <- paste0('condition_',1:ncol(exp_data))
    se <- SummarizedExperiment::SummarizedExperiment(assays=list(counts=exp_data))
    gnet_result <- gnet(se,reg_names,init_method,init_group_num)
    save_gnet(gnet_result)

[Package GNET2 version 1.4.0 Index]