UTR3eSet-class {InPAS} | R Documentation

## Class `UTR3eSet`

### Description

An object of class `UTR3eSet` represents the results of 3UTR usage

### Objects from the Class

Objects can be created by calls of the form `new("UTR3eSet", usage, PDUI, PDUI.log2, short, long, signals, testRes)`

### Slots

`usage`

  an GRanges object with CP sites info.

`PDUI`

  a matrix of PDUI

`PDUI.log2`

  log2 transformed PDUI matrix

`short`

  a matrix of usage of short form

`long`

  a matrix of usage of long form

`signals`

  signals used for single sample

`testRes`

  a matrix of test results of testUsage

### Methods

$, $<-

  Get or set the slot of UTR3eSet

as("UTR3eSet", "ExpressionSet")

  Convert a UTR3eSet to an ExpressionSet.

as("UTR3eSet", "GRanges")

  Convert a UTR3eSet to an GRanges.

### Author(s)

Jianhong Ou

[Package InPAS version 1.20.0 Index]