searchDistalCPs {InPAS} | R Documentation

## search distal CP sites

### Description

search distal CP sites

### Usage

    searchDistalCPs(chr.cov.merge, conn_next_utr3,
                curr_UTR, window_size,
                depth.weight,
                long_coverage_threshold,
                background, z2s)

### Arguments

`chr.cov.merge` | coverage of current chromosome
`conn_next_utr3` | joint to next 3UTR or not (used for removeUTR3__UTR3)
`curr_UTR` | GRanges of current 3UTR
`window_size` | window size
`depth.weight` | output of depthWeight
`long_coverage_threshold` | cutoff value for coverage of long form 3UTR
`background` | local background range
`z2s` | cut off background scores. see zScoreThrethold

### Value

a list

### Author(s)

Jianhong Ou

### See Also

`distalAdj`, `PAscore2`

[Package InPAS version 1.20.0 Index]