plot_enrichment_depletion {MutationalPatterns} | R Documentation

## Plot enrichment/depletion of mutations in genomic regions

### Description

Plot enrichment/depletion of mutations in genomic regions

### Usage

    plot_enrichment_depletion(df)

### Arguments

`df` | Dataframe result from enrichment_depletion_test()

### Value

Plot with two parts. 1: Barplot with no. mutations expected and observed per region. 2: Effect size of enrichment/depletion (log2ratio) with results significance test.

### See Also

`enrichment_depletion_test`, `genomic_distribution`

### Examples

    ## See the 'genomic_distribution()' example for how we obtained the
    ## following data:
    distr <- readRDS(system.file("states/distr_data.rds",
                        package="MutationalPatterns"))

    tissue = c( "colon", "colon", "colon",
                "intestine", "intestine", "intestine",
                "liver", "liver", "liver" )

    ## Perform the enrichment/depletion test.
    distr_test = enrichment_depletion_test(distr, by = tissue)
    distr_test2 = enrichment_depletion_test(distr)

    ## Plot the enrichment/depletion
    plot_enrichment_depletion(distr_test)
    plot_enrichment_depletion(distr_test2)

[Package MutationalPatterns version 2.0.0 Index]