plot-pics {PICS} | R Documentation

## Plot methods for PICS objects

### Description

Methods to plot `pics` and `segReads` objects and derived classes.

### Usage

    ## S4 method for signature 'pics,segReads'
    plot(
      x,
      y,
      addKernel = FALSE,
      addNucleosome = FALSE,
      addSe = TRUE,
      main = NULL,
      ...
    )

    ## S4 method for signature 'picsError,segReads'
    plot(x, y, addKernel = FALSE, main = NULL, ...)

    ## S4 method for signature 'picsList,segReadsList'
    plot(
      x,
      y,
      regionIndex = NULL,
      addKernel = FALSE,
      addNucleosome = FALSE,
      addSe = TRUE,
      main = NULL,
      ...
    )

### Arguments

`x, y` | Objects
`addKernel` | Add kernel density estimate to the plot.
`addNucleosome` | Add a nucleosome track to the plot.
`addSe` | Add standard error to the plot.
`main` | Main title.
`...` | Arguments to be passed to the plot method.
`regionIndex` | Add region index to the plot.

### Functions

- `plot,pics,segReads-method`: Plot method for `pics` and `segReads`

- `plot,picsError,segReads-method`: Plot method for `picsError` and `segReads`

- `plot,picsList,segReadsList-method`: Plot method for `picsList` and `segReadsList`

[Package PICS version 2.32.0 Index]