segReadsListPE-class {PICS} | R Documentation

## Class and methods for list of candidate regions from paired-end data

### Description

Class and methods for list of candidate regions from paired-end data

### Usage

    segReadsListPE(List, paraSW, N, NFm, NRm, Nc, NcFm, NcRm)

    ## S4 method for signature 'segReadsListPE,ANY,ANY,ANY'
    x[i, j, ..., drop = FALSE]

    ## S4 method for signature 'segReadsListPE,ANY,ANY'
    x[[i, j, ..., exact = TRUE]]

### Arguments

`List` | A `list` of `segReadsPE` objects.
`paraSW` | A `list` of parameters for the genomic regions.
`N, NFm, NRm` | Read counts in the data.
`Nc, NcFm, NcRm` | Read counts in the control.
`x, i, j, ..., drop, exact` | Arguments passed to subset methods

### Functions

- `segReadsListPE`: `segReadsListPE` constructor.

- `[,segReadsListPE,ANY,ANY,ANY-method`: subset method

- `[[,segReadsListPE,ANY,ANY-method`: subset method

[Package PICS version 2.32.0 Index]