findTaxonomy {PathoStat} | R Documentation

## Find the taxonomy for unlimited tids

### Description

Find the taxonomy for unlimited tids

### Usage

    findTaxonomy(tids)

### Arguments

`tids` | Given taxonomy ids

### Value

taxondata Data with the taxonomy information

### Examples

    example_data_dir <- system.file("example/data", package = "PathoStat")
    pathoreport_file_suffix <- "-sam-report.tsv"
    datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix,
    input.files.name.vec = as.character(1:6))
    dat <- datlist$data
    ids <- rownames(dat)
    tids <- unlist(lapply(ids, FUN = grepTid))
    # taxonLevels <- findTaxonomy(tids[1:5])

[Package PathoStat version 1.14.0 Index]