pePathway-class {ROntoTools} | R Documentation

## Class that encodes the result of Pathway-Express for a single pathway

### Description

Class that encodes the result of Pathway-Express for a single pathway

### Slots

`map`:

  an object of type graph (e.g., `graphNEL`).

`input`:

  named vector of fold changes for genes on this pathway. The names of the genes are the orignal IDS used in the analysis

`ref`:

  vector of reference IDs on this pathway

`boot`:

  an object of class `boot` encoding the bootstrap information.

`Pert`:

  the gene perturbation factors for all genes on the pathway, as computed by Pathway-Express.

`Acc`:

  the gene accumulations for all genes on the pathway, as computed by Pathway-Express.

`asGS`:

  pathway was considered as gene set

### Author(s)

Calin Voichita and Sorin Draghici

### See Also

`pe`, `peRes-class`

[Package ROntoTools version 2.16.0 Index]