plot_network {STRINGdb} | R Documentation

## plot_network

### Description

Plots an image of the STRING network with the given proteins.

### Usage

    ## S4 method for signature 'STRINGdb'
    plot_network(string_ids, payload_id=NULL, required_score=NULL, add_link=TRUE, add_summary=TRUE)

### Arguments

`string_ids` | a vector of STRING identifiers
`payload_id` | an identifier of payload data on the STRING server (see method post_payload for additional informations)
`required_score` | a threshold on the score that overrides the default score_threshold, that we use only for the picture
`add_link` | parameter to specify whether you want to generate and add a short link to the relative page in STRING. As default this option is active but we suggest to deactivate it in case one is generating many images (e.g. in a loop). Deactivating this option avoids to generate and store a lot of short-urls on our server.
`add_summary` | parameter to specify whether you want to add a summary text to the picture. This summary includes a p-value and the number of proteins/interactions.

### Author(s)

Andrea Franceschini

[Package STRINGdb version 2.0.2 Index]