termcnt {SemDist} | R Documentation

## Term Count Data

### Description

This data set contains the term count values for each term in the requested ontology/species (the number of times that the term annotates a protein). This can be used along with the parent count to calculate information accretion.

### Usage

    termcnt

### Format

A named numeric vector with one value corresponding to each GO accession in the ontology.

### Source

The gene ontology data was obtained from the GO.db package and the annotation data was obtained from the following packages for each organism:

anopheles = org.Ag.eg.db

arabidopsis = org.At.tair.db

bovine = org.Bt.eg.db

canine = org.Cf.eg.db

chicken = org.Gg.eg.db

chimp = org.Pt.eg.db

ecolik12 = org.EcK12.eg.db

fly = org.Dm.eg.db

human = org.Hs.eg.db

malaria = org.Pf.plasmo.db

mouse = org.Mm.eg.db

pig = org.Ss.eg.db

rat = org.Rn.eg.db

rhesus = org.Mmu.eg.db

worm = org.Ce.eg.db

xenopus = org.Xl.eg.db

yeast = org.Sc.sgd.db

zebrafish = org.Dr.eg.db

### Examples

    data("Term_Count_mouse_CC", package = "SemDist")
    str(termcnt)

[Package SemDist version 1.22.0 Index]