mergeCls {SubCellBarCode} | R Documentation

## Merge compartment and neighborhood classification

### Description

Compartment and neighborhood classifications are merged for the single output.

### Usage

    mergeCls(compartmentCls, neighborhoodCls)

### Arguments

`compartmentCls` | data.frame; all predictions, including unclassified as well, and probablity vectors for each protein in compartment classification
`neighborhoodCls` | data.frame; all predictions, including unclassified as well, and probablity vectors for each protein in compartment classification

### Value

cls.df

### Examples

    {

    #create mock data
    com.df <- data.frame(Proteins = "TP53",
    svm.pred = "N1",
    S1 = as.numeric(0.02),
    S2 = as.numeric(0.02),
    S3 = as.numeric(0.02),
    S4 = as.numeric(0.02),
    N1 = as.numeric(0.72),
    N2 = as.numeric(0.02),
    N3 = as.numeric(0.02),
    N4 = as.numeric(0.02),
    C1 = as.numeric(0.02),
    C2 = as.numeric(0.02),
    C3 = as.numeric(0.02),
    C4 = as.numeric(0.02),
    C5 = as.numeric(0.02),
    M1 = as.numeric(0.02),
    M2 = as.numeric(0.02))

    rownames(com.df) <- "TP53"

    neig.df <- data.frame(Proteins = "TP53",
    svm.pred.all = "Nuclear",
    Secretory = as.numeric(0.01),
    Nuclear = as.numeric(0.95),
    Cytosol = as.numeric(0.02),
    Mitochondria = as.numeric(0.02))

    rownames(neig.df) <- "TP53"

    cls.df <- mergeCls(com.df, neig.df)

    }

[Package SubCellBarCode version 1.4.0 Index]