qualityScore {arrayQuality} | R Documentation

## Quality Control score for general hybridization

### Description

This function returns, for each quality measure, the percentage of reference slides measures which are below the tested slide values. For more details on this score, refer to the online manual.

### Usage

    qualityScore(slidequality, organism = c("Mm", "Hs"), reference =
    NULL)

### Arguments

`slidequality` | A quality matrix from slideQuality.
`reference` | A matrix resulting from globalQuality, to be used as reference table to compare slides. If 'NULL', the default table corresponding to organism will be used. See details for more information.
`organism` | A "character" string naming the organism genome printed on the array, either "Mm" or "Hs". By default, organism is set to "Mm". It is used to retrieve the corresponding reference tables.

### Value

QualityScore returns a matrix of percentages of qc measures under the lower limit of the reference values.

### Author(s)

Agnes Paquet

[Package arrayQuality version 1.66.0 Index]