plotBeadLocations {beadarray} | R Documentation

## Plot bead locations

### Description

Can plot where specified beads, or bead types were located on the array surface

### Usage

    plotBeadLocations(BLData, ProbeIDs = NULL, BeadIDs = NULL, array = 1, SAM = FALSE, xCol = "GrnX", yCol = "GrnY", xlab = "x-coordinate", ylab = "y-coordinate", horizontal = TRUE, main = paste("Bead", ProbeIDs, "locations"), ...)

### Arguments

`BLData` | a `beadLevelData` object
`ProbeIDs` | a list of ArrayAddress IDs to plot
`BeadIDs` | a list of beads (rows in the beadLevelData object) to plot
`array` | the number of the section to plot
`SAM` | if TRUE the array is treated as a Sentrix Array Matrix (hexagonal)
`xCol` | column name for the x coordinates
`yCol` | column name for the x coordinates
`xlab` | optional label for the x axis
`ylab` | optional label for the y axis
`horizontal` | if TRUE the longest edge of the array surface will be plotted on the x axis
`main` | an optional title for the plot
`...` | any arguments to be passed to plots

### Value

plot to current graphical device

### Author(s)

Mark Dunning

### Examples

    if(require(beadarrayExampleData)){

    data(exampleBLData)

    ##Plot location of first 100 beads as they are listed in beadLevelData object

    plotBeadLocations(exampleBLData, BeadIDs = 1:100, array=1, horizontal = FALSE)

    }

[Package beadarray version 2.38.0 Index]