go.results.to.latex {cellTree} | R Documentation

## LaTeX output for Gene Ontology Enrichment results

### Description

Outputs or writes result tables of Gene Ontology enrichment testing in LaTeX format.

### Usage

    go.results.to.latex(go.results, tex.file.name = "go_terms.tex",
      topic.colors = rainbow(length(go.results$all)))

### Arguments

`go.results` | GO Enrichment result list object, such as returned by `compute.go.enrichment`.
`tex.file.name` | String (optional). If not `NULL`: name of the file to save to.
`topic.colors` | RGB colour vector (optional). Colors to use for each topic.

### Value

GO enrichment results in LaTeX format

### Examples

    # Load pre-computed LDA model for skeletal myoblast RNA-Seq data from HSMMSingleCell package:
    data(HSMM_lda_model)

    # Load GO mapping database for 'homo sapiens':
    library(org.Hs.eg.db)
    # Compute GO enrichment sets for each topic:
    go.results = compute.go.enrichment(HSMM_lda_model, org.Hs.eg.db, bonferroni.correct=TRUE)

    # Output LaTeX tables for GO results
    latex.table = go.results.to.latex(go.results, tex.file.name='go_results.tex')

    # [Optional] compile LaTeX to PDF (need to have LaTeX binaries installed):
    library('tools')
    texi2pdf('go_results.tex')
    library('Biobase')
    openPDF('go_results.pdf')

[Package cellTree version 1.17.0 Index]