Package: compcodeR
Type: Package
Title: RNAseq data simulation, differential expression analysis and
        performance comparison of differential expression methods
Version: 1.24.0
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")))
Description: This package provides extensive functionality for
    comparing results obtained by different methods for
    differential expression analysis of RNAseq data. It also
    contains functions for simulating count data and interfaces to
    several packages for performing the differential expression
    analysis.
Depends: R (>= 3.0.2), sm
Imports: tcltk, knitr (>= 1.2), markdown, ROCR, lattice (>= 0.16),
        gplots, gtools, gdata, caTools, grid, KernSmooth, MASS,
        ggplot2, stringr, modeest, edgeR, limma, vioplot, methods
Suggests: BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
        2.2.0), genefilter, NOISeq, TCC, NBPSeq (>= 0.3.0), rmarkdown
Enhances: rpanel, DSS
License: GPL (>= 2)
VignetteBuilder: knitr
biocViews: ImmunoOncology, RNASeq, DifferentialExpression
RoxygenNote: 7.1.0
URL: https://github.com/csoneson/compcodeR
BugReports: https://github.com/csoneson/compcodeR/issues
git_url: https://git.bioconductor.org/packages/compcodeR
git_branch: RELEASE_3_11
git_last_commit: 342ff43
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 03:37:07 UTC; biocbuild
Author: Charlotte Soneson [aut, cre] (<https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Built: R 4.0.0; ; 2020-04-28 17:05:54 UTC; windows
