loops-class {diffloop} | R Documentation

## A class to represent ChIA-PET interaction data and annotations

### Description

A class to represent ChIA-PET interaction data and annotations

### Slots

`anchors`

  A GRanges object describing loop anchor locations

`interactions`

  A matrix. Each row is an interaction between two anchors

`counts`

  A matrix with the number paired-end reads per loop per sample

`colData`

  A data.frame with features (colums) for each sample (rows)

`rowData`

  A data.frame with features (columns) for each loop (rows)

[Package diffloop version 1.16.0 Index]