leukemiasClassifier {geNetClassifier} | R Documentation

## Sample leukemias classifier

### Description

A sample of the object returned by geNetClassifier. Containins the classifier, the network, and the gene statistics.

### Usage

    data(leukemiasClassifier)

### Format

`GeNetClassifierReturn object`

### Examples

    data(leukemiasClassifier)
    # Global view of the object and its structure:
    leukemiasClassifier
    names(leukemiasClassifier)

    # Call and acess to the classifier:
    leukemiasClassifier@call
    leukemiasClassifier@classifier

    # Genes used for training the classifier:
    numGenes(leukemiasClassifier@classificationGenes)
    leukemiasClassifier@classificationGenes
    genesDetails(leukemiasClassifier@classificationGenes)

    # Generalization Error estimated by cross-validation:
    # 	leukemiasClassifier@generalizationError
    #	overview(leukemiasClassifier@generalizationError)

    # List of Networks by classes:
    leukemiasClassifier@genesNetwork

    # Access to the nodes or edges of each network:
    getEdges(leukemiasClassifier@genesNetwork$AML)[1:5,]
    getNodes(leukemiasClassifier@genesNetwork$AML)[1:50]

    # Global genes ranking:
    leukemiasClassifier@genesRanking
    numGenes(leukemiasClassifier@genesRanking)
    numSignificantGenes(leukemiasClassifier@genesRanking)
    # getTopRanking(leukemiasClassifier@genesRanking, 10)

[Package geNetClassifier version 1.28.0 Index]