colon_pathwayCollection {pathwayPCA} | R Documentation

## Gene Pathway Subset

### Description

An example Canonical Pathways Gene Subset from the Broad Institute: File: `c2.cp.v6.0.symbols.gmt`.

### Usage

    colon_pathwayCollection

### Format

A `pathwayCollection` list of two elements:

- `pathways` : A list of 15 character vectors. Each vector contains the names of the individual genes within that pathway as a vector of character strings.

- `TERMS` : A character vector of length 15 containing the names of the gene pathways.

### Details

This is a subset of 15 pathways from the Broad Institute pathways list. This subset contains seven pathways which are related to the response information in the `colonSurv_df` data file.

### Source

http://software.broadinstitute.org/gsea/msigdb/collections.jsp

[Package pathwayPCA version 1.4.0 Index]