SubsetOmicsResponse {pathwayPCA} | R Documentation

## Access and Edit Response of an `OmicsReg` or `OmicsReg` Object

### Description

"Get" or "Set" the values of the `response_num` or `response_fact` slots of an object of class `OmicsReg` or `OmicsReg`, respectively.

### Usage

    getResponse(object, ...)

    getResponse(object) <- value

    ## S4 method for signature 'OmicsPathway'
    getResponse(object, ...)

    ## S4 replacement method for signature 'OmicsPathway'
    getResponse(object) <- value

### Arguments

`object` | An object of class `OmicsReg-class` or `OmicsCateg-class`.
`...` | Dots for additional internal arguments (currently unused).
`value` | The replacement object to be assigned to the `response` slot.

### Details

These functions can be useful to set or extract the response vector from an object of class `OmicsReg` or `OmicsReg`. However, we recommend that users simply create a new, valid object instead of modifying an existing one. The validity of edited objects is checked with their respective `ValidOmicsCateg` or `ValidOmicsReg` function. Because both classes have a `response` slot, we set this method for the parent class, `OmicsPathway-class`.

### Value

The "get" functions return the objects in the slots specified: `getResponse` returns the `response_num` vector from objects of class `OmicsReg` and the `response_fact` vector from objects of class `OmicsCateg`. These functions can extract these values from any valid object of those classes.

The "set" functions enable the user to edit or replace the object in the `response_num` slot for any `OmicsReg` object or `response_fact` slot for any `OmicsCateg` object, provided that the new values do not violate the validity check of such an object. See "Details" for more information.

### See Also

`CreateOmics`

### Examples

      data("colonSurv_df")
      data("colon_pathwayCollection")

      colon_Omics <- CreateOmics(
        assayData_df = colonSurv_df[, -(2:3)],
        pathwayCollection_ls = colon_pathwayCollection,
        response = colonSurv_df[, c(1, 2)],
        respType = "reg"
      )

      getResponse(colon_Omics)

[Package pathwayPCA version 1.4.0 Index]