wikipwsHS_Symbol_pathwayCollection {pathwayPCA} | R Documentation

## Wikipathways Homosapiens Gene Symbols

### Description

A `pathwayCollection` object containing the homosapiens pathways list from Wikipathways (https://www.wikipathways.org/).

### Usage

    wikipwsHS_Symbol_pathwayCollection

### Format

A `pathwayCollection` list of three elements:

- `pathways` : A named list of 457 character vectors. Each vector contains the Gene Symbols of the individual genes within that pathway as a vector of character strings. The names are the shorthand pathway names.

- `TERMS` : A character vector of length 457 containing the shorthand names of the gene pathways.

- `description` : A character vector of length 457 containing the full names of the gene pathways.

### Details

This `pathwayCollection` was sent to us from Dr. Alexander Pico at the Gladstone Institute (https://gladstone.org/our-science/people/alexander-pico).

This pathway collection was translated from EntrezIDs to HGNC Symbols with the script `convert_EntrezID_to_HGNC_Ensembl.R` in `scripts`.

### Source

Dr. Alexander Pico, Wikipathways

[Package pathwayPCA version 1.4.0 Index]