convertToNCBIGeneID {scTensor} | R Documentation

## ID conversion function to create the input matrix for scTensor

### Description

Duplicated row names or NA row names are removed from input matrix, and the matrix with the row names of NCBI Gene ID is generated.

### Usage

    convertToNCBIGeneID(input, rowID, LefttoRight)

### Arguments

`input` | Input matrix (or data.frame).
`rowID` | Gene identifier in each row of the input matrix. The length of rowID must be same as the number of tht input matrix.
`LefttoRight` | Corresponding table with left column (Gene identifier <same type of row ID>) and right column (NCBI Gene ID).

### Value

A matrix object with with the row names of NCBI Gene ID.

### Author(s)

Koki Tsuyuzaki

### Examples

    input <- matrix(1:20, nrow=4, ncol=5)
    rowID <- c("A", NA, "B", "B")
    LefttoRight <- rbind(
      c("A", "1"),
      c("B", "2"),
      c("B", "4"),
      c("D", NA)
    )
    (input <- convertToNCBIGeneID(input, rowID, LefttoRight))

[Package scTensor version 1.4.3 Index]