Package: sitePath
Type: Package
Title: Detection of sites with fixation of amino acid substitutions in
        protein evolution
Version: 1.4.2
Author: Chengyang Ji, Aiping Wu
Maintainer: Chengyang Ji <chengyang.ji12@alumni.xjtlu.edu.cn>
Description: The package does hierarchical search for fixation events given
    multiple sequence alignment and phylogenetic tree. These fixation events
    can be specific to a phylogenetic lineages or shared by multiple lineages.
License: MIT + file LICENSE
Depends: R (>= 3.6.0)
Imports: ape, seqinr, Rcpp, methods, graphics, utils, stats
Suggests: testthat, knitr, rmarkdown, BiocStyle
LinkingTo: Rcpp
RoxygenNote: 7.1.0
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/wuaipinglab/sitePath
BugReports: https://github.com/wuaipinglab/sitePath/issues
biocViews: Alignment, MultipleSequenceAlignment, Phylogenetics, SNP,
        Software
git_url: https://git.bioconductor.org/packages/sitePath
git_branch: RELEASE_3_11
git_last_commit: 6c69dfc
git_last_commit_date: 2020-06-11
Date/Publication: 2020-06-16
NeedsCompilation: yes
Packaged: 2020-06-17 06:43:47 UTC; biocbuild
Built: R 4.0.0; i386-w64-mingw32; 2020-06-17 18:18:26 UTC; windows
Archs: i386, x64
