MasterFdrResults-class {synapter} | R Documentation

## Class `"MasterFdrResults"`

### Description

This class stored the results of the

### Objects from the Class

Objects are created with the `estimateMasterFdr` function.

### Slots

`all`:

  Object of class `"data.frame"` with results of all possible combinations.

`files`:

  Object of class `"character"` with file names used in combinations.

`best`:

  Object of class `"data.frame"` with results of the best combination.

`masterFdr`:

  Object of class `"numeric"` storing the best combination.

### Methods

bestComb

  `signature(object = "MasterFdrResults")`: ...

allComb

  `signature(object = "MasterFdrResults")`: ...

fileNames

  `signature(object = "MasterFdrResults")`: ...

masterFdr

  `signature(object = "MasterFdrResults")`: ...

plot

  `signature(x = "MasterFdrResults", y = "missing")`: ...

show

  `signature(object = "MasterFdrResults")`: ...

### Author(s)

Laurent Gatto <lg390@cam.ac.uk>

### References

Improving qualitative and quantitative performance for MSE-based label free proteomics, N.J. Bond, P.V. Shliaha, K.S. Lilley and L. Gatto, Journal of Proteome Research, 2013, in press.

The Effects of Travelling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies, P.V. Shliaha, N.J. Bond, L. Gatto and K.S. Lilley, Journal of Proteome Research, 2013, in press.

### Examples

    ## Not run:
    library(synapterdata)
    loadMaster()
    class(master)
    master

    ## End(Not run)

[Package synapter version 2.12.0 Index]