transcriptogramPreprocess {transcriptogramer} | R Documentation

## Creates an object of class Transcriptogram

### Description

Constructor for the Transcriptogram object.

### Usage

    transcriptogramPreprocess(association, ordering, radius = 0L)

### Arguments

`association` | A matrix, or data.frame, containing two columns of ENSEMBL Peptide IDs (character); or the path for a file containing two columns, no header, with rows composed by the ENSEMBL Peptide IDs of two proteins that are connected.
`ordering` | A character vector containing ordered ENSEMBL Peptide IDs; a data.frame containing two columns, the first one with ENSEMBL Peptide IDs (character), and the second containing its respective position (non-negative integer); or the path for a file containing two columns, a row for the headers, with rows composed respectively by a ENSEMBL Peptide ID and its respective position.
`radius` | An non-negative integer referring to the window radius required for some methods.

### Value

A preprocessed object of class Transcriptogram.

### Author(s)

Diego Morais

### See Also

Transcriptogram-class, association, Hs900

### Examples

    transcriptogram <- transcriptogramPreprocess(association, Hs900)

[Package transcriptogramer version 1.10.0 Index]