Package: ChIC
Title: Quality Control Pipeline for ChIP-Seq Data
Version: 1.8.0
Author: Carmen Maria Livi
Maintainer: Carmen Maria Livi <carmen.livi@ifom.eu>
Description: Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Imports: ChIC.data (>= 1.7.1), caTools, methods,GenomicRanges, IRanges,
        parallel, progress, caret, grDevices, stats, utils, graphics,
        S4Vectors, BiocGenerics
Depends: spp, R (>= 3.6)
biocViews: ChIPSeq, QualityControl
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/ChIC
git_branch: RELEASE_3_11
git_last_commit: c0d546e
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 03:34:50 UTC; biocbuild
