An R representation of a flowJo workspace.

Source: R/flowJoWorkspace_Methods.R

Objects can be created by calls of the form new("flowjo_workspace.xml", ...).

Slots

version:

Object of class "character". The version of the XML workspace.

file:

Object of class "character". The file name.

.cache:

Object of class "environment". An environment for internal use.

path:

Object of class "character". The path to the file.

doc:

Object of class "XMLInternalDocument". The XML document object.

options:

Object of class "integer". The XML parsing options passed to xmlTreeParse.

See also

GatingSet GatingHierarchy

Examples

  require(flowWorkspaceData)
#> Loading required package: flowWorkspaceData
  d<-system.file("extdata",package="flowWorkspaceData")
  wsfile<-list.files(d,pattern="A2004Analysis.xml",full=TRUE)
  ws <- open_flowjo_xml(wsfile);
  ws
#> File location:  /usr/local/lib/R/cytoset/flowWorkspaceData/extdata/A2004Analysis.xml 
#> 
#> Groups in Workspace
#>          Name Num.Samples
#> 1 All Samples           2
  fj_ws_get_samples(ws)
#>   sampleID                       name count pop.counts
#> 1        1 a2004_O1T2pb05i_A1_A01.fcs 61832         19
#> 2        2 a2004_O1T2pb05i_A2_A02.fcs 45363         19