Package: MatrixRider
Type: Package
Title: Obtain total affinity and occupancies for binding site matrices
        on a given sequence
Version: 1.20.0
Date: 2015-11-02
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e@gmail.com>
Description: Calculates a single number for a whole sequence that
        reflects the propensity of a DNA binding protein to interact
        with it. The DNA binding protein has to be described with a PFM
        matrix, for example gotten from Jaspar.
biocViews: GeneRegulation, Genetics, MotifAnnotation
License: GPL-3
Depends: R (>= 3.1.2)
Imports: methods, TFBSTools, IRanges, XVector, Biostrings
Suggests: RUnit, BiocGenerics, BiocStyle, JASPAR2014
LinkingTo: IRanges, XVector, Biostrings, S4Vectors
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/MatrixRider
git_branch: RELEASE_3_11
git_last_commit: 07c8da5
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
Packaged: 2020-04-28 01:44:09 UTC; biocbuild
