Package: TNBC.CMS
Type: Package
Date: 2020-03-27
Title: TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes
Version: 1.4.0
Author: Doyeong Yu, Jihyun Kim, In Hae Park, Charny Park 
Maintainer: Doyeong Yu <parklab.bi@gmail.com>
Description: This package implements a machine learning-based classifier for the assignment of consensus molecular subtypes to TNBC samples. It also provides functions to summarize genomic and clinical characteristics.
License: GPL-3
Encoding: UTF-8
biocViews: Classification, Clustering, GeneExpression, GenePrediction,
        SupportVectorMachine
RoxygenNote: 6.1.1
Depends: R (>= 3.6.0), e1071, quadprog, SummarizedExperiment
Imports: GSVA (>= 1.26.0), pheatmap, grDevices, RColorBrewer, pracma,
        GGally, R.utils, forestplot, ggplot2, ggpubr, survival, grid,
        stats, methods
Suggests: knitr
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/TNBC.CMS
git_branch: RELEASE_3_11
git_last_commit: 26c3d01
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 04:02:54 UTC; biocbuild
