Package: scoreInvHap
Title: Get inversion status in predefined regions
Version: 1.10.0
Authors@R: c(person("Carlos", "Ruiz", , "carlos.ruiz@isglobal.org", role = c("aut", "cre")),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Description: scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as
 input and requires the following information about the inversion: genotype frequencies in the different
 haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the
 reference. The package include this data for 21 inversions.
Depends: R (>= 3.4.0)
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: Biostrings, methods, snpStats, VariantAnnotation,
        GenomicRanges, BiocParallel, graphics, SummarizedExperiment
Suggests: testthat, knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
biocViews: SNP, Genetics, GenomicVariation
git_url: https://git.bioconductor.org/packages/scoreInvHap
git_branch: RELEASE_3_11
git_last_commit: fc1e7b3
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 03:06:06 UTC; biocbuild
Author: Carlos Ruiz [aut, cre],
  Juan R. Gonzalez [aut]
Maintainer: Carlos Ruiz <carlos.ruiz@isglobal.org>
