Package: ArrayExpressHTS
Title: ArrayExpress High Throughput Sequencing Processing Pipeline
Version: 1.40.0
Author: Angela Goncalves, Andrew Tikhonov
Maintainer: Angela Goncalves <filimon@ebi.ac.uk>, Andrew Tikhonov
 <andrew@ebi.ac.uk>
Description: RNA-Seq processing pipeline for public ArrayExpress
        experiments or local datasets
Depends: sampling, Rsamtools (>= 1.99.0), snow
Imports: Biobase, BiocGenerics, Biostrings, DESeq, GenomicRanges,
        Hmisc, IRanges (>= 2.13.11), R2HTML, RColorBrewer, Rsamtools,
        ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods,
        rJava, stats, svMisc, utils, sendmailR, bitops
LinkingTo: Rhtslib (>= 1.15.3)
SystemRequirements: GNU make
License: Artistic License 2.0
biocViews: ImmunoOncology, RNASeq, Sequencing
git_url: https://git.bioconductor.org/packages/ArrayExpressHTS
git_branch: RELEASE_3_12
git_last_commit: 8e951b9
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-27 22:42:32 UTC; biocbuild
Built: R 4.0.3; x86_64-apple-darwin17.0; 2020-10-28 12:17:48 UTC; unix
