NetPathMiner-package	NetPathMiner-package
assignEdgeWeights	assignEdgeWeights
biopax2igraph	biopax2igraph
colorVertexByAttr	colorVertexByAttr
expandComplexes	makeGeneNetwork
extractPathNetwork	extractPathNetwork
ex_biopax	ex_biopax
ex_kgml_sig	ex_kgml_sig
ex_microarray	ex_microarray
ex_sbml	ex_sbml
fetchAttribute	MIRIAM
getAttribute	getAttr
getAttrNames	getAttr
getAttrStatus	getAttr
getGeneSetNetworks	getGeneSetNetworks
getGeneSets	getGeneSets
getPathsAsEIDs	getPathsAsEIDs
KGML2igraph	KGML2igraph
layoutVertexByAttr	layoutVertexByAttr
makeGeneNetwork	makeGeneNetwork
makeMetaboliteNetwork	makeMetaboliteNetwork
makeReactionNetwork	makeReactionNetwork
NetPathMiner	NetPathMiner-package
NPM	NetPathMiner-package
NPMdefaults	NPMdefaults
pathClassifier	pathClassifier
pathCluster	pathCluster
pathRanker	pathRanker
pathsToBinary	pathsToBinary
plotAllNetworks	plotAllNetworks
plotClassifierROC	plotClassifierROC
plotClusterMatrix	plotClusters
plotClusterProbs	plotClusters
plotClusters	plotClusters
plotCytoscapeGML	plotCytoscape
plotNetwork	plotNetwork
plotPathClassifier	plotPathClassifier
plotPathCluster	plotPathCluster
plotPaths	plotPaths
predictPathClassifier	predictPathClassifier
predictPathCluster	predictPathCluster
registerMemoryErr	registerMemoryErr
reindexNetwork	reindexNetwork
rmAttribute	getAttr
rmSmallCompounds	rmSmallCompounds
samplePaths	samplePaths
SBML2igraph	SBML2igraph
setAttribute	getAttr
simplifyReactionNetwork	simplifyReactionNetwork
stdAttrNames	MIRIAM
toGraphNEL	toGraphNEL
vertexDeleteReconnect	vertexDeleteReconnect
