BASiCS_ResultVG {BASiCS} | R Documentation

## The BASiCS_ResultVG class

### Description

Container of results for a single HVG/LVG test.

### Slots

`Method`

  Character value detailing whether the test performed using a threshold directly on epsilon values (`Method="Epsilon"`), variance decomposition (`Method="Variance"`) or percentiles of epsilon (`Method="Percentile"`).

`RowData`

  Optional DataFrame containing additional information about genes used in the test.

`EFDRgrid,EFNRgrid`

  Grid of EFDR and EFNR values calculated before thresholds were fixed.

`Threshold`

  Threshold used to calculate tail posterior probabilities for the HVG or LVG decision rule.

`ProbThresholds`

  Probability thresholds used to calculate `EFDRGrid` and `EFNRGrid`.

`ProbThreshold`

  Posterior probability threshold used in the HVG/LVG decision rule.

[Package BASiCS version 2.2.4 Index]