trackBTree {BubbleTree} | R Documentation

## trackBTree

### Description

get the geom_segment location of the BTree track

### Usage

    trackBTree(.Object, rbd1, rbd2, is.matched = FALSE, min.srcSize = 0.5,
      min.trtSize = 0.1, min.overlap = 1e+05)

    ## S4 method for signature 'BTreePlotter'
    trackBTree(.Object, rbd1, rbd2, is.matched = FALSE,
      min.srcSize = 0.5, min.trtSize = 0.1, min.overlap = 1e+05)

### Arguments

`.Object` | the object
`rbd1` | rbd one
`rbd2` | rbd two
`is.matched` | is it matched
`min.srcSize` | min src size
`min.trtSize` | min trt size
`min.overlap` | min overlap

### Value

geom_segment location of BTree track

### Examples

    load(system.file("data", "allCall.lst.RData", package="BubbleTree"))

    btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10)
    nn <- "sam2"
    rbd1 <- allCall.lst[[nn]]@rbd
    rbd2 <- allCall.lst[[nn]]@rbd.adj
    arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01,
                         min.trtSize=0.01)
    btree <- drawBTree(btreeplotter, rbd1) +
        drawBubbles(btreeplotter, rbd2, "gray80") + arrows

[Package BubbleTree version 2.20.0 Index]