diva_to_gatingset {CytoML} | R Documentation

## Parse a FACSDiva Workspace

### Description

Function to parse a FACSDiva Workspace, generate a `GatingHierarchy` or `GatingSet` object, and associated flowCore gates.

### Usage

    diva_to_gatingset(
      obj,
      name = NULL,
      subset = NULL,
      path = obj@path,
      worksheet = c("normal", "global"),
      swap_cols = list(`FSC-H` = "FSC-W", `SSC-H` = "SSC-W"),
      verbose = FALSE,
      ...
    )

### Arguments

`obj` | diva_workspace
`name` | sample group to be parsed, either numeric index or the group name
`subset` | samples to be imported. either numeric index or the sample name. Default is NULL, which imports all samples.
`path` | the FCS data path
`worksheet` | select worksheet to import. either "normal" or "global"
`swap_cols` | diva seems to swap some data cols during importing fcs to experiments this argument provide a list to tell the parser which cols to be swapped default is list(‘FSC-H' = ’FSC-W',‘SSC-H' = ’SSC-W')
`verbose` | whether print more messages during the parsing
`...` | other arguments

[Package CytoML version 2.2.2 Index]