plot3D {CytoTree} | R Documentation

## Visualization of 3D data of CYT

### Description

Visualization of 3D data of CYT

### Usage

    plot3D(
      object,
      item.use = c("PC1", "PC2", "PC3"),
      color.by = "stage",
      order.by = NULL,
      size = 1,
      angle = 60,
      scale.y = 0.8,
      category = "categorical",
      main = "3D plot of CYT",
      color.theme = NULL,
      ...
    )

### Arguments

`object` | A CYT object
`item.use` | character. Items use to 3D plot, axes x and y and z must be numeric.
`color.by` | character. Dot or mesh color by which character. It can be one of the column of plot.meta, or it can be just "density" (the default value).
`order.by` | character. Order of color theme.
`size` | numeric. size of the dot
`angle` | numberic. angle of the plot
`scale.y` | numeric. scale of y axis related to x- and z axis
`category` | character. numeric or categorical
`main` | character. title of the plot
`color.theme` | vector. Color themes use in the plot.
`...` | options to pass on to the `scatterplot3d` function.

### Value

gplots figure

### Examples

    cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
    cyt <- readRDS(file = cyt.file)

    plot3D(cyt, item.use = c("DC_2","DC_1","DC_3"), color.by = "stage",
           size = 0.5, angle = 60, color.theme = c("#FF99FF","#7A06A0","#FF3222"))

[Package CytoTree version 1.0.3 Index]