plotXICgroup {DIAlignR} | R Documentation

## Plot Extracted-ion chromatogram group.

### Description

Plot Extracted-ion chromatogram group.

### Usage

    plotXICgroup(XIC_group, peakAnnot = NULL, Title = NULL)

### Arguments

`XIC_group` | (list) It is a list of dataframe which has two columns. First column is for time and second column indicates intensity.
`peakAnnot` | (numeric) Peak-apex time.
`Title` | (logical) TRUE: name of the list will be displayed as title.

### Value

A plot to the current device.

### Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-13

### Examples

    dataPath <- system.file("extdata", package = "DIAlignR")
    runs <- c("hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt",
     "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt")
    XICs <- getXICs(analytes = 4618L, runs = runs, dataPath = dataPath, oswMerged = TRUE)
    plotXICgroup(XICs[["hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"]][["4618"]])
    XICs <- smoothXICs(XICs[["hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"]][["4618"]],
      type = "sgolay", kernelLen = 13, polyOrd = 4)
    plotXICgroup(XICs, Title = "Precursor 4618 \n
     run hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt")

[Package DIAlignR version 1.2.0 Index]