analytesFromFeatures {DIAlignR} | R Documentation

## Outputs analytes below FDR

### Description

Provides all found analytes or only common analytes that have m-score less than analyteFDR.

### Usage

    analytesFromFeatures(features, analyteFDR = 1, commonAnalytes = TRUE)

### Arguments

`features` | (list of data-frames) contains features and their properties identified in each run.
`analyteFDR` | (numeric) only analytes that have m-score less than this, will be included in the output.
`commonAnalytes` | (logical) TRUE: intersect across all runs, FASLE: union across all runs.

### Value

a vector of integer.

### Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2020) + GPL-3 Date: 2020-04-14

### See Also

`getFeatures`

### Examples

    dataPath <- system.file("extdata", package = "DIAlignR")
    fileInfo <- getRunNames(dataPath = dataPath)
    features <- getFeatures(fileInfo, maxFdrQuery = 1.00, runType = "DIA_proteomics")
    ## Not run:
    commonAnalytes <- analytesFromFeatures(features, analyteFDR = 0.01, commonAnalytes = TRUE)

    ## End(Not run)

[Package DIAlignR version 1.2.0 Index]