oswFiles_DIAlignR {DIAlignR} | R Documentation

## Analytes information from osw files

### Description

analytes info from three SWATH runs:

run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML

### Usage

    oswFiles_DIAlignR

### Format

A list of three elements where each element consists of a dataframe:

transition_group_id

  ID of each peptide

RT

  Retention time, in sec

intensity

  Inensity of associated feature

leftWidth

  Left width of the peak, in sec

rightWidth

  Right width of the peak, in sec

peak_group_rank

  Ranking of associated feature

m_score

  qvalue of associated feature

### Source

Raw files are downloaded from Peptide Atlas. File test_GenerateData.R has source code to generate the example data.

[Package DIAlignR version 1.2.0 Index]