FunChIP-package {FunChIP} | R Documentation

## Clustering and Alignment of ChIP-Seq peaks based on their shapes

### Description

Efficient implementation of the k-mean alignment algorithm to classify spline-smoothed ChIP-Seq peaks.

### Details

Package: | FunChIP
Type: | Package
Version: | 0.99.4
Date: | 2016-07-07
License: | GPL-3

### Author(s)

Alice Parodi, Marco J. Morelli, Laura M. Sangalli, Piercesare Secchi, Simone Vantini

### References

Sangalli, L.M., Secchi, P., Vantini, S., Vitelli, V., 2010. "K-mean alignment for curve clustering". Computational Statistics and Data Analysis, 54, 1219-1233.

### See Also

`pileup_peak, smooth_peak, summit_peak, distance_peak, cluster_peak, choose_k, plot_peak`

[Package FunChIP version 1.16.0 Index]