sensiCisOutput-class {GGtools} | R Documentation

## Class `"sensiCisOutput"`

### Description

This class helps to manage the results from a collection of cis-eQTL searches.

### Objects from the Class

Objects can be created by calls of the form `new("sensiCisOutput", ...)`.

### Slots

`byGene`:

  Object of class `"GRanges"`, organized to provide ranges for genes and their best associated cis SNP

`bySNP`:

  Object of class `"GRanges"` organized to provide easy access to genomic coordinates of SNP found to be most strongly associated with a gene in cis

`tabAtFDRB`:

  Object of class `"ANY"` a flattened table that defines tuning parameters and eQTL yield for a collection of searches

`input`:

  Object of class `"sensiCisInput"` : object that describes the files and parameter settings used for the sensitivity analysis

`thecall`:

  Object of class `"call"`: the call generating this instance

`fdrbound`:

  Object of class `"numeric"`: gives the upper bound on FDR for declaring an eQTL

`sessionInfo`:

  Object of class `"ANY"`: describes state of system in which the object was made.

### Methods

show

  `signature(object = "sensiCisOutput")`: concise rendering with hints

### Author(s)

VJ Carey <stvjc@channing.harvard.edu>

### Examples

    showClass("sensiCisOutput")

[Package GGtools version 5.25.3 Index]