profileCGH {GLAD} | R Documentation

## Objects of Class profileCGH and profileChr

### Description

Description of the objects `profileCGH` and `profileChr`. The last object corresponds to data of only one chromosome.

### Details

`LogRatio, Chromosome` and `PosOrder` are compulsory.

### Value

Objects `profileCGH` and `profileChr` are composed of a list with the first element `profileValues` which is a `data.frame` with the following columns names:

`LogRatio` | Test over Reference log-ratio.
`PosOrder` | The rank position of each clone on the genome.
`PosBase` | The base position of each clone on the genome.
`Chromosome` | Chromosome name.
`Clone` | The name of the corresponding clone.
`...` | Other elements can be added.

### Note

People interested in tools dealing with array CGH analysis can visit our web-page http://bioinfo.curie.fr.

### Author(s)

Philippe HupÃ©, glad@curie.fr.

### See Also

`glad`, `as.profileCGH`.

### Examples

    data(snijders)
    gm13330$Clone <- gm13330$BAC
    profileCGH <- as.profileCGH(gm13330)
    class(profileCGH) <- "profileCGH"

    profileChr <- as.profileCGH(gm13330[which(gm13330$Chromosome==1),])
    class(profileChr) <- "profileChr"

[Package GLAD version 2.54.0 Index]